As Colin advises, inspect EVERYTHING!
Don't rob "Peter to pay Paul", if the engine ran using the original carb, do a straight swap of carbs, to see if the carb could be at fault. Swapping carb components just gives more variables!

May I also suggest a cooler plug, NGK BR7HIX, rather than your NGK BR6HIX. I have found that I was getting blistering of the central insulator surface when using the 6 heat range and that this has disappeared when using the 7. Nigel Lacey and others often use a cooler 8 heat range when racing. I also note that when using the NGK BR6HIX, NGK recommend an air gap of 0.5mm (0.019") that appears "tight" to me? Also, try another plug, just because it's new doesn't mean that it will spark consistently under compression.
I use a standard B7HS, gapped at 0.7mm (0.028") that is one heat range cooler and gapped 0.2mm greater than suggested by NGK in their current catalogue and I am using an Electrex Hall effect ignition single plug setup on the 450 MKIII.
Hope the gremlin is found sooner rather than later and that you can enjoy riding the bike, which looks great.
Good health, Bill